About this Event
We will host the training course on October 9-11, 2023 at the La Jolla Institute for Immunology in San Diego, CA. It will be followed by Quantitative Bioimaging Society Workshop on Multiplex Image Analysis on October 12-13, also at La Jolla Institute.
We strongly suggest to take advantage of the whole training course. Each day will explore sample preparation and image analysis questions with increasing complexity. We also understand how valuable your time is and that you might not be able to participate in the whole event, so we offer the flexibility of participating in only selected days.
On Day 1, October 9th we will focus on sample visualization in QuPath, preparation of figures, and using QuPath efficiently for annotations. We will teach you how to plan and report on your experiments to improve the reproducibility and robustness of your data and your analysis. If you are a novice QuPath user, you don't want to skip this day!
On Day 2, October 10th using the tools we learned on Day 1, we will do cell detection and use pixel classifiers for measuring areas. We will present machine-learning tools for cell classification and spot counting. We will address the most common image analysis tasks and show how improvement in sample preparation can simplify image analysis.
On Day 3, October 11th we will explore deep-learning-based tools for cell segmentation: Stardist and Cellpose. To do that efficiently we will introduce you to scripting in QuPath. We will share our approach to segmenting difficult, branching cells. We will also teach how to perform spatial analysis and use cell density maps.
Event Venue & Nearby Stays
La Jolla Institute for Immunology (LJI), 9420 Athena Circle, San Diego, United States
USD 150.00 to USD 450.00
